Citation work is tracked in the review frontmatter field separately from topic tags.
Citation repairs
- ALFA-tag
- Allelic exclusion and inclusion
- AlphaFlow and ESMFlow
- AlphaMissense
- Axe-like CDRH3 loops
- BRIL
- Complementarity-determining regions
- Conformational entropy in antibodies decreases during affinity maturation
- Coupling sidechain and main chain prediction or design does not always lead to improvements
- De novo antibody design
- DiffDock
- Dimensionality reduction
- Directed evolution
- Distillation
- ESM-IF outperforms ProteinMPNN on Ab inverse folding and affinity prediction
- Glycosylation
- Including confidence improves DL-based docking
- Inverse folding of CDRs benefits from span masking during training
- Large-scale measurements, such as Kd and IC50, from different assays correlate weakly in different studies
- No one-size-fits-all approach to scoring antibody structures
- Observable Antibody Space
- OmegaFold
- PLM attention matrices correspond to 3D contacts
- Sources of sequence diversity in antibodies
- Structure prediction neural networks predict different conformations of a given sequence depending on if a single chain is predicted versus multiple chains