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Tag: antibody-antigen-interactions/complex-prediction
16 items with this tag.
Apr 28, 2026
AlphaFold3 ipTM can distinguish between antibody binders and nonbinders
alphafold3
structure-prediction/complex-prediction
tm-score
confidence-metrics
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Ab-Ag inverse folding methods benefit from pretraining
inverse-folding/training
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
AlphaFold2 recapitulates interaction biases from PDB when modeling antibodies
alphafold2
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Antibody structure prediction improved with AlphaFold2 features
alphafold2
antibody-structure-prediction/cdr
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Antibody-antigen modeling by diffusion-based structure prediction is data-limited
alphafold3
structure-prediction/complex-prediction
diffusion-models/structure-prediction
plddt
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Antigen context improves CDRH3 structure prediction
structure-prediction/complex-prediction
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Correct CDRH3 prediction is necessary but insufficient for correct Ab-Ag docking
structure-prediction/complex-prediction
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Correct antibody-antigen prediction in AF3 and related models is partially determined by training set similarity
alphafold3
structure-prediction/complex-prediction
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Dropout improves AF2 multimer prediction, including for antibody-antigen complexes
alphafold2
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Increasing diffusion samples is sufficient to yield correctly predicted antibody-antigen complexes
structure-prediction/complex-prediction
diffusion-models/implementation
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
LM-based antibody structure prediction methods work equally well with generic and Ab PLMs
protein-language-models/antibodies
antibody-structure-prediction/cdr
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
No one-size-fits-all approach to scoring antibody structures
antibody-developability/general
variant-effect-prediction
citation-fix
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
PAE weakly correlates with Ab-Ag binding
antibody-structure-prediction/complex-prediction
pae
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Structure-based methods outperform sequence-based methods on antigen-dependent antibody design
protein-language-models/antibodies
antibody-structure-prediction/complex-prediction
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
The structures of nanobodies with kinked CDR3 loops are more difficult to predict in complex with their antigen
antibody-structure-prediction/complex-prediction
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Variable regions can adopt multiple interchain orientations, and these are difficult to predict
structure-prediction/limitations
antibody-antigen-interactions/complex-prediction