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Tag: protein-language-models/antibodies
21 items with this tag.
Apr 28, 2026
Antibody language model log-likelihood is a decent surrogate for sequence reasonableness
protein-language-models/antibodies
Apr 21, 2026
Generic PLMs outperform antibody-specific PLMs on zero-shot predictions of affinity changes
protein-language-models/antibodies
thermostability/prediction
antibody-antigen-interactions/binding-affinity
Apr 21, 2026
LM-based antibody structure prediction methods work equally well with generic and Ab PLMs
protein-language-models/antibodies
antibody-structure-prediction/cdr
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Structure-based methods outperform sequence-based methods on antigen-dependent antibody design
protein-language-models/antibodies
antibody-structure-prediction/complex-prediction
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
Antibody LMs are worse for expression prediction than generic PLMs
protein-language-models/antibodies
antibody-developability/expression
Apr 21, 2026
Antibody LMs outperform generic PLMs on intrafamily thermostability prediction
protein-language-models/antibodies
Apr 21, 2026
Antibody PLMs match or outperform generic PLMs on specificity prediction
protein-language-models/antibodies
Apr 21, 2026
Antibody language models are able to distinguish correctly and incorrectly paired sequences, but are sensitive to scale and training dataset size
protein-language-models/antibodies
Apr 21, 2026
Attention matrices from antibody LMs can be used for paratope prediction
protein-language-models/antibodies
Apr 21, 2026
Attention matrices of antibody language models do not correspond to contacts
protein-language-models/antibodies
Apr 21, 2026
CDR representations segregate into distinct clusters
protein-language-models/antibodies
antibody-structure-prediction
alignment/sequence-based
Apr 21, 2026
Features for antibody property prediction derived from MD simulations outperform those from language models and static structures
protein-language-models/antibodies
Apr 21, 2026
Light chain representations affected by heavy chain, but not vice versa
protein-language-models/antibodies
Apr 21, 2026
Optimal scaling of antibody LMs improves prediction of masked CDRH3 residues but not framework residues
protein-language-models/antibodies
antibody-structure-prediction/cdr
Apr 21, 2026
PLMs are better at reproducing sequence-based developability predictions than structure-based predictions
protein-language-models/antibodies
antibody-developability/general
Apr 21, 2026
PLMs are biased toward germline antibodies
protein-language-models/antibodies
affinity-maturation
Apr 21, 2026
PLMs cluster antibodies from the same repertoire by V gene and maturation status
protein-language-models/antibodies
alignment/sequence-based
Apr 21, 2026
Paired antibody LMs outperform equivalent unpaired LMs on sequence recovery for various regions
protein-language-models/antibodies
Apr 21, 2026
Template CDR retrieval using embeddings
protein-language-models/antibodies
antibody-structure-prediction/cdr
tm-score
alignment/sequence-based
Apr 21, 2026
Training antibody language models on normalized mutation frequencies improves zero-shot expression prediction
protein-language-models/antibodies
Apr 21, 2026
Contrastive fine-tuning PLMs on inverse folding embeddings of experimental structures but not computational models improves downstream tasks
protein-language-models/antibodies
contrastive-learning