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Tag: antibody-structure-prediction/cdr
19 items with this tag.
Apr 21, 2026
Antibody structure prediction improved with AlphaFold2 features
alphafold2
antibody-structure-prediction/cdr
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
LM-based antibody structure prediction methods work equally well with generic and Ab PLMs
protein-language-models/antibodies
antibody-structure-prediction/cdr
antibody-antigen-interactions/complex-prediction
Apr 21, 2026
CDRH3 conformation is affected by interdomain orientation
antibody-structure-prediction/cdr
Apr 21, 2026
Different CDRL3 lengths are found in functional and dysfunctional antibodies
antibody-structure-prediction/cdr
Apr 21, 2026
Inclusion of adjacent loops can improve CDRH3 structural modeling
antibody-structure-prediction/cdr
Apr 21, 2026
Inverse folding models trained on all proteins outperform those trained on Abs for CDR prediction
antibody-structure-prediction/cdr
Apr 21, 2026
Kappa subtype restricts CDRH3 dynamics
antibody-structure-prediction/cdr
Apr 21, 2026
Kinks in nanobody CDR3 loops are correctly predicted by structure prediction methods
antibody-structure-prediction/cdr
antibodies/nanobodies
Apr 21, 2026
Loops from one V-region chain affect the conformations and dynamics of loops in the other chain
antibody-structure-prediction/cdr
Apr 21, 2026
Nanobody CDRH3 loops are longer but more compact
antibody-structure-prediction/cdr
antibodies/nanobodies
Apr 21, 2026
Optimal scaling of antibody LMs improves prediction of masked CDRH3 residues but not framework residues
protein-language-models/antibodies
antibody-structure-prediction/cdr
Apr 21, 2026
QM-MM and unbiased MD are insufficient to correctly determine CDRH3 conformation
antibody-structure-prediction/cdr
Apr 21, 2026
Template CDR retrieval using embeddings
protein-language-models/antibodies
antibody-structure-prediction/cdr
tm-score
alignment/sequence-based
Apr 21, 2026
pLDDT is inversely correlated with CDRH3 length
antibody-structure-prediction/cdr
plddt
pae
Apr 21, 2026
CDRH3 flanking residues more conserved and easier to predict than those in the center
antibody-structure-prediction/cdr
Apr 21, 2026
Deep learning methods produce different CDRH3 conformers
antibody-structure-prediction/cdr
Apr 21, 2026
Length independent clustering improves CDR prediction
antibody-structure-prediction/cdr
Apr 21, 2026
Psi torsion angles are effective metadynamic CVs for CDRH3 and CDRL3
antibody-structure-prediction/cdr
Apr 21, 2026
Sequence clusters and structural clusters of CDRH3 do not overlap
antibody-structure-prediction/cdr