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Antibody structure

Antibody structure

Created Sep 26, 2026Modified Sep 07, 2026

Predicting isolated antibody and nanobody structures, CDR conformations, and interdomain orientations.

22 items with this tag.

Jul 20, 2026
Heavy-chain templates and self-distillation improve nanobody structure prediction
Jul 17, 2026
Antibody structure prediction improved with AlphaFold2 features
- prediction/antibody-structure
- model-design/multimodal
Apr 21, 2026
Antigen context improves CDRH3 structure prediction
Apr 21, 2026
Correct CDRH3 prediction is necessary but insufficient for correct Ab-Ag docking
- prediction/complexes
- prediction/antibody-structure
Apr 21, 2026
LM-based antibody structure prediction methods work equally well with generic and Ab PLMs
- prediction/antibody-structure
- inference/feature-extraction
Apr 21, 2026
Variable regions can adopt multiple interchain orientations, and these are difficult to predict
Apr 21, 2026
Attention matrices of antibody language models do not correspond to contacts
- model-analysis/interpretability
- prediction/antibody-structure
Apr 21, 2026
DL structure prediction methods cannot predict CDR conformations unseen during training
- evidence/generalization
- prediction/antibody-structure
Apr 21, 2026
DL structure tools introduce chiral errors such as swapped chiral centers, D-amino acids, and cis-amide bonds
- prediction/structure
- prediction/antibody-structure
Apr 21, 2026
IgFold
- prediction/antibody-structure
- model-design/architectures
Apr 21, 2026
ImmuneBuilder
- prediction/antibody-structure
Apr 21, 2026
Inclusion of adjacent loops can improve CDRH3 structural modeling
Apr 21, 2026
Kinks in nanobody CDR3 loops are correctly predicted by structure prediction methods
Apr 21, 2026
OmegaFold
- prediction/structure
- prediction/antibody-structure
Apr 21, 2026
PyRosetta convert mAb structure numbering
- antibodies/architecture
- prediction/antibody-structure
Apr 21, 2026
QM-MM and unbiased MD are insufficient to correctly determine CDRH3 conformation
- prediction/antibody-structure
- biophysics/molecular-simulation
Apr 21, 2026
Template CDR retrieval using embeddings
- prediction/antibody-structure
- inference/feature-extraction
Apr 21, 2026
pLDDT is inversely correlated with CDRH3 length
- prediction/confidence
- prediction/antibody-structure
Apr 21, 2026
CDRH3 flanking residues more conserved and easier to predict than those in the center
- antibodies/architecture
- prediction/antibody-structure
Apr 21, 2026
Deep learning methods produce different CDRH3 conformers
- prediction/antibody-structure
- prediction/ensembles
Apr 21, 2026
Length independent clustering improves CDR prediction
- prediction/antibody-structure
- evolution/homology
Apr 20, 2026
Antibody structure prediction
- prediction/antibody-structure
- prediction/complexes

Created with Quartz v4.5.2 © 2026

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