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Tag: inverse-folding/evaluation
31 items with this tag.
May 06, 2026
ESM-IF outperforms ProteinMPNN on Ab inverse folding and affinity prediction
inverse-folding/evaluation
citation-fix
Apr 21, 2026
Glutamate- and lysine-rich designs can fail due to expression failures resulting from adenosine-rich sequences
inverse-folding/evaluation
Apr 21, 2026
Adding noise sometimes leads to greater diversity during inverse folding inference
inverse-folding/evaluation
Apr 21, 2026
BERT-based inverse folding models generate overly repetitive sequences
inverse-folding/evaluation
Apr 21, 2026
Backbone geometry of valine and isoleucine can be detected by inverse folding methods without sequence context
inverse-folding/evaluation
Apr 21, 2026
Designed sequences of flexible proteins are dependent on conformation
inverse-folding/evaluation
Apr 21, 2026
Directed evolution can uncover beneficial sequence modifications that might be missed by inverse folding
inverse-folding/evaluation
Apr 21, 2026
ESM-IF representations can predict if residue binds ligands
inverse-folding/evaluation
ligand-docking
Apr 21, 2026
Inverse folding can be improved by incorporating larger PLMs
inverse-folding/evaluation
Apr 21, 2026
Inverse folding can generate more stable sequences when jointly run alongside a protein folding model
inverse-folding/evaluation
thermostability/design
Apr 21, 2026
Inverse folding from MD simulations
inverse-folding/evaluation
Apr 21, 2026
Inverse folding generalizes to unseen structures better than PLMs
inverse-folding/evaluation
Apr 21, 2026
Inverse folding models can distinguish between and design backbones belonging to transmembrane and soluble beta-barrels
inverse-folding/evaluation
protein-backbone-design/designability
Apr 21, 2026
Inverse folding of CDRs benefits from span masking during training
inverse-folding/evaluation
citation-fix
Apr 21, 2026
Inverse folding sequence perplexities correlate with Rosetta energies, forward folding TM-scores, and sequence recovery
inverse-folding/evaluation
tm-score
Apr 21, 2026
Inverse folding sequence recovery can be improved by simultaneously learning side chain packing
inverse-folding/evaluation
Apr 21, 2026
Language models can be infused with structure via low-rank adapter layers
inverse-folding/evaluation
Apr 21, 2026
MPNN-like design profiles may be the source of high thermostability
inverse-folding/evaluation
thermostability/design
Apr 21, 2026
Nearly half of CATH domains do not pass designability filters used to evaluate protein backbone design performance
inverse-folding/evaluation
protein-backbone-design/designability
Apr 21, 2026
ProteinMPNN-derived inverse folding methods underdesign aromatic residues
inverse-folding/evaluation
protein-backbone-design/designability
Apr 21, 2026
Running inverse folding in a random order leads to greater sequence recovery than running in a fixed-order
inverse-folding/evaluation
Apr 21, 2026
Sequence recovery in inverse folding models is not correlated with self-consistency of generated designs
inverse-folding/evaluation
Apr 21, 2026
Sequence recovery of inverse folding lower for smaller proteins
inverse-folding/evaluation
Apr 21, 2026
Sequence recovery using inverse folding is lower on NMR structures than crystal structures
inverse-folding/evaluation
Apr 21, 2026
Sheets are less designable than helices
inverse-folding/evaluation
protein-backbone-design/designability
Apr 21, 2026
Substitution matrix for inverse folding closely matches BLOSUM62 matrix except proline
inverse-folding/evaluation
Apr 21, 2026
The effect of including both sequence and structural features can be synergistic
inverse-folding/evaluation
Apr 21, 2026
Triangular update can be repurposed for inverse folding
inverse-folding/evaluation
Apr 21, 2026
Zero-shot protein stability prediction using inverse folding models can be improved by subtracting predictions from residue in isolation
inverse-folding/evaluation
Apr 21, 2026
Fitness prediction using inverse folding can be improved with auxiliary B-factor and SASA losses
inverse-folding/evaluation
variant-effect-prediction
Apr 21, 2026
Inverse folding methods outperform sequence design by hallucination
inverse-folding/evaluation
protein-backbone-design/designability
plddt