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Tag: protein-backbone-design/designability
20 items with this tag.
Apr 21, 2026
Adding noise while training non-Ab inverse folding models improves self-consistency while worsening sequence recovery
inverse-folding/training
protein-backbone-design/designability
Apr 21, 2026
Affinity maturation of de novo minibinders introduces mutations far from the active site
protein-backbone-design/designability
affinity-maturation
Apr 21, 2026
AlphaFold2 outperforms ESMFold at distinguishing designable and undesignable protein backbones
alphafold2
protein-backbone-design/designability
Apr 21, 2026
De novo designed backbones can increase the size of proteins for cryo-EM structure determination
protein-backbone-design/designability
Apr 21, 2026
De novo designed proteins with alpha helices are easier to predict than those with other secondary structures
protein-backbone-design/designability
Apr 21, 2026
Inverse folding models can distinguish between and design backbones belonging to transmembrane and soluble beta-barrels
inverse-folding/evaluation
protein-backbone-design/designability
Apr 21, 2026
Low-pLDDT hallucinated models from AF3-generation protein structure predictors are designable
alphafold3
protein-backbone-design/designability
plddt
Apr 21, 2026
Most possible alpha-beta topologies unexplored by nature
protein-backbone-design/designability
Apr 21, 2026
Natural sequences have higher pTM but lower pLDDT than de novo sequences
protein-backbone-design/designability
tm-score
plddt
Apr 21, 2026
Nearly half of CATH domains do not pass designability filters used to evaluate protein backbone design performance
inverse-folding/evaluation
protein-backbone-design/designability
Apr 21, 2026
Protein language models and PLM-based structure prediction generalize to de novo designed proteins
protein-backbone-design/designability
Apr 21, 2026
Protein structure prediction methods predict idealized secondary structures in de novo proteins
protein-backbone-design/designability
Apr 21, 2026
ProteinMPNN-derived inverse folding methods underdesign aromatic residues
inverse-folding/evaluation
protein-backbone-design/designability
Apr 21, 2026
Sequence-based variant effect prediction methods generalize to de novo proteins
protein-backbone-design/designability
Apr 21, 2026
Sheets are less designable than helices
inverse-folding/evaluation
protein-backbone-design/designability
Apr 21, 2026
The structures of shorter de novo designed sequences are easier to predict than those of longer proteins
protein-backbone-design/designability
Apr 21, 2026
Buried nonpolar surface area is a major determinant of whether de novo designed proteins are stable
protein-backbone-design/designability
Apr 21, 2026
Computational models are less designable than experimental structures
protein-backbone-design/designability
Apr 21, 2026
De novo structure prediction with ligands outperforms apo de novo structure prediction alone
protein-backbone-design/designability
Apr 21, 2026
Inverse folding methods outperform sequence design by hallucination
inverse-folding/evaluation
protein-backbone-design/designability
plddt